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Search human gut metagenomic metadata and profile, and download them of selected entries. Analyze with them or your own dataset.
The user can filter the entries by using the available main filters or search box in the “Quick search” section. After filtering, the user can download metadata and profile of selected entries, or import them to “Analyze” section.
The “Advanced search” section provides the user with the ability to search with more complex conditions but slowlier. The user can download metadata and profile of selected entries, or import them to “Analyze” section, too.
The user can download the database and tools in the “Tool” section to obtain profiles of their own metagenomic data. And then the users can analyze them to “Analyze” section in isolation or with other data download from Search section.
“Analyze” section provides an interactive way of bioinfomatic analysis online with metadata and profile filtered in search page or uploaded by the user. The user can plot with interactive options and download images.
Release 1.0 (May 2022) - 1,082 human gut samples profiled using Kraken2 database built based on MBCN(14,166 species-level clusters)
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The MicrobiotaCN user interface is divided into three main sections so users can choose the section that better fits their needs. The first section, “Quick search”, holds the full content of the databases' current version, as well as the ability to filter the samples through their main characteristics. The “Advanced search” section provides the user with the ability to search with more complex conditions but slowlier. The “Tool” section provides to the user the Kraken2 and mOTUs database built with our genomes collection. Finally, the “Analyze” section provides an interactive way of bioinfomatic analysis online with metadata and profile filtered in search page or uploaded by the user.
“Quick search” is available for users to access the full content of HumanMetagenomeDB, as well as filter the dataset according to the main available features.
“Advanced search” section provides to the user the ability to search with more complex conditions but slowlier, especillay when uses the condition of “Equals”. It is recommand to use other condition like “Contains” to speedup
“Tool” section provides to the user the Kraken2 and mOTUs database built with our genomes collection. Users can download the database and software to obtain the profiles of their own metagenomic data. It's recommended that you use the Kraken2 database when you have enough computing resource. Only when your server is lack of memory, the mOTUs database is recommended
“Analyze” section provides an interactive way of bioinfomatic analysis online with metadata and profile filtered in search page or uploaded by the user.
Please contact with us by email aetherwalker965@gmail.com